PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008238754.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 484aa    MW: 54407.1 Da    PI: 7.565
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008238754.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.51.8e-11309355455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h e+Er+RR+++N++f  Lr+++P+       K++ ++ L  Av YI++L+
  XP_008238754.1 309 NHVEAERQRREKLNHRFYLLRSVVPNV-----SKMDRSSLLADAVAYINQLK 355
                     699***********************6.....5*****************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.4E-3722212IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474593.27E-16303369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.94E-13303359No hitNo description
PROSITE profilePS5088815.688305354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-9309354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-15309367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-14311360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MEAIISSCSS PNFCQENLGT FQQRLQFIFQ NRPEWWVYSI FWQPSKDSND QVSLSWAAGD  60
FRVNSDLASK RNNKVTNNHQ PKFGFNKKVT SIEAEEALLD EDMVDLEMRL VDHGDVTGSE  120
WFYFYSVSLT QSFAAGHATN NILGRAFCSG GFVWLAGAHE LQFYECERVK EARMHGIQTL  180
VCIATPYGVL ELASLDVIKE DWGFVHLSKS LFVSDNDNNN RVSQQNGSRK GNVLAPLLEN  240
RIFSGSQKKL TRQAAGTKEA APFNIGGSSP ESLSGSVGNF TCENTENTRS KKRSRSSNNG  300
ASRESSLLNH VEAERQRREK LNHRFYLLRS VVPNVSKMDR SSLLADAVAY INQLKAKVEE  360
LELKTQAQPQ NPQRVSVNNL DNQCSQSTNS IVDHHSSYNN TKVVPVEVDV KIMGSEAIIR  420
VQCPDQDYPY ARLMNALKGL GLQVYHASIS SVKELMIQDV VARMPYGFTS EEAMRIGIIK  480
RWHN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yz6_A3e-23152123192Transcription factor MYC3
4rs9_A3e-23152123192Transcription factor MYC3
4rqw_B3e-23152123192Transcription factor MYC3
4rqw_A3e-23152123192Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008238754.10.0PREDICTED: transcription factor MYC4-like isoform X1
TrEMBLM5WX790.0M5WX79_PRUPE; Uncharacterized protein
STRINGPOPTR_0001s11400.11e-131(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.13e-57bHLH family protein